Dcu_g04945 (CHR9)

Aliases : CHR9

Description : chromatin remodeling factor *(ERCC6) & original description: none

Gene families : OG0007136 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007136_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g04945

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os05g15890.1	CHR9, LOC_Os05g15890	chromatin remodeling factor (ERCC6)	0.03	OrthoFinder output from all 47 species
Mp2g14200.1	CHR9	chromatin remodeling factor (ERCC6)	0.02	OrthoFinder output from all 47 species
Msp_g31651	CHR9	chromatin remodeling factor *(ERCC6) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g51608	No alias	chromatin remodeling factor *(ERCC6) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g39033	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012522_P002	CHR9, Zm00001e012522	chromatin remodeling factor (ERCC6)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	266	523
IPR001650	Helicase_C	644	752

External Links

No external refs found!