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  5. Dcu_g04708

Dcu_g04708 (PTAC17)


Aliases : PTAC17

Description : cofactor of plastid-encoded RNA polymerase *(TAC17) & original description: none


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g04708
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Azfi_s0152.g053430 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ceric.38G055600.1 PTAC17, Ceric.38G055600 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001110.7 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g22058 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01017471001 PTAC17 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Gb_00365 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
LOC_Os02g55630.1 PTAC17, LOC_Os02g55630 TAC17 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Len_g48260 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Lfl_g01488 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g12994 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.05 OrthoFinder output from all 47 species
Ore_g26422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014804 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0495.g027428 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Sam_g27089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo405512 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 86 271
IPR011629 CobW-like_C 354 447
No external refs found!