Dcu_g04377

Description : assembly factor involved in RuBisCo assembly *(RbcX) & original description: none

Gene families : OG0005102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g04377

Target	Alias	Description	ECC score	Gene Family Method
Aob_g01138	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.09	OrthoFinder output from all 47 species
Aob_g25994	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.05	OrthoFinder output from all 47 species
Aop_g00191	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.06	OrthoFinder output from all 47 species
Azfi_s0262.g060824	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.03	OrthoFinder output from all 47 species
Cba_g46690	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.09	OrthoFinder output from all 47 species
Ceric.33G059700.1	Ceric.33G059700	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.03	OrthoFinder output from all 47 species
Dac_g08983	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.11	OrthoFinder output from all 47 species
Dde_g46091	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.09	OrthoFinder output from all 47 species
Gb_02160	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_02161	No alias	RbcX assembly factor involved in RuBisCo assembly	0.03	OrthoFinder output from all 47 species
LOC_Os07g38230.1	LOC_Os07g38230	RbcX assembly factor involved in RuBisCo assembly	0.03	OrthoFinder output from all 47 species
Len_g00251	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.06	OrthoFinder output from all 47 species
Lfl_g05877	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.09	OrthoFinder output from all 47 species
Mp1g26500.1	No alias	RbcX assembly factor involved in RuBisCo assembly	0.11	OrthoFinder output from all 47 species
Msp_g05315	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.02	OrthoFinder output from all 47 species
Ore_g04011	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.02	OrthoFinder output from all 47 species
Ore_g16545	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.03	OrthoFinder output from all 47 species
Pir_g00338	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.04	OrthoFinder output from all 47 species
Pnu_g13514	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.06	OrthoFinder output from all 47 species
Pnu_g19931	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.04	OrthoFinder output from all 47 species
Sam_g25402	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.03	OrthoFinder output from all 47 species
Solyc01g087190.4.1	Solyc01g087190	RbcX assembly factor involved in RuBisCo assembly	0.02	OrthoFinder output from all 47 species
Spa_g13070	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.03	OrthoFinder output from all 47 species
Spa_g46694	No alias	assembly factor involved in RuBisCo assembly *(RbcX) &...	0.05	OrthoFinder output from all 47 species
Zm00001e011815_P001	Zm00001e011815	RbcX assembly factor involved in RuBisCo assembly	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0044183	protein folding chaperone	IEA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004618	phosphoglycerate kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003435	Chaperonin_RcbX	82	183

External Links

No external refs found!

Dcu_g04377

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation