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  5. Dcu_g03970

Dcu_g03970


Description : regulatory GTPase (NOG1) of LSU processome & original description: none


Gene families : OG0004754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g03970
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00241220 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AMTR_s00032p00058660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Adi_g020856 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Aob_g02108 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.05 OrthoFinder output from all 47 species
Cba_g68683 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G116000.1 Ceric.01G116000 regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Ehy_g11193 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Lfl_g02079 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
MA_89272g0010 No alias NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Pir_g05601 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002936 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Smo231970 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc01g081010.4.1 Solyc01g081010 NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Tin_g04665 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.05 OrthoFinder output from all 47 species
Zm00001e030762_P002 Zm00001e030762 NOG1 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010674 NOG1_Rossman_fold_dom 235 292
IPR012973 NOG_C 409 462
IPR041623 NOG1_N 6 165
No external refs found!