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  5. Dcu_g03916

Dcu_g03916


Description : not classified & original description: none


Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g03916

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00133480 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00047p00213160 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00096p00172010 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT1G30010 No alias Intron maturase, type II family protein 0.02 OrthoFinder output from all 47 species
Adi_g021888 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Als_g01930 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene19303.t1 Aspi01Gene19303 nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.04 OrthoFinder output from all 47 species
Ceric.09G034500.1 Ceric.09G034500 not classified & original description: pacid=50588493... 0.03 OrthoFinder output from all 47 species
Ceric.16G062100.1 Ceric.16G062100 nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Dde_g07740 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g12856 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Ehy_g01601 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Gb_04055 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os10g41790.1 LOC_Os10g41790 nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Lfl_g18272 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007424 No alias nMAT1/2 type-I mitochondrial RNA splicing factor &... 0.03 OrthoFinder output from all 47 species
Solyc08g077385.1.1 Solyc08g077385 nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e000458_P001 Zm00001e000458 nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e000640_P001 Zm00001e000640 nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!