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  5. Dcu_g03900

Dcu_g03900 (BP, BP1, KNAT1)


Aliases : BP, BP1, KNAT1

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g03900
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g19694.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Pp3c18_18720V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.02 OrthoFinder output from all 47 species
Pp3c18_18750V3.1 Pp3c18_18750 KNOTTED1-like homeobox gene 6 0.01 OrthoFinder output from all 47 species
Pp3c19_5610V3.1 Pp3c19_5610 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c19_5620V3.1 BP, BP1, KNAT1,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
Pp3c21_10320V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
Pp3c6_1550V3.1 KNAT4, Pp3c6_1550 KNOTTED1-like homeobox gene 3 0.01 OrthoFinder output from all 47 species
Solyc01g100510.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR005539 ELK_dom 308 328
IPR008422 Homeobox_KN_domain 347 386
IPR005540 KNOX1 166 204
IPR005541 KNOX2 218 263
No external refs found!