Aliases : ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1
Description : basal Sigma-type transcription factor & original description: none
Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00072720 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00011p00266100 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00025p00248060 | SIGD, SIG4,... | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
AT1G08540 | ATSIG1, SIGB,... | RNApolymerase sigma subunit 2 | 0.03 | OrthoFinder output from all 47 species | |
AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.03 | OrthoFinder output from all 47 species | |
AT5G13730 | SIGD, SIG4 | sigma factor 4 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g013131 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g022157 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02431 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g12116 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g20576 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Als_g27390 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g09016 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g09018 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.07 | OrthoFinder output from all 47 species | |
Aob_g09050 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene43774.t1 | ATSIG1, SIGB,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0001.g000670 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0178.g056190 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g03997 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.05G066000.1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cre03.g194950 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g08589 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01019326001 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024261001 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01025717001 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01035330001 | SIGC, SIG3 | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
Gb_23845 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Gb_37602 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
MA_10429585g0010 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Mp7g15030.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g08661 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Msp_g08662 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g21262 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g32531 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0198.g025553 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g19255 | No alias | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g16166 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e021683_P001 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006352 | DNA-templated transcription initiation | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
No external refs found! |