Dcu_g02558 (HIS1-3)

Aliases : HIS1-3

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g02558

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.02	OrthoFinder output from all 47 species
Adi_g029498	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g04558	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0099.g044182	No alias	linker histone *(H1) & original description: CDS=160-858	0.05	OrthoFinder output from all 47 species
Ceric.30G041600.1	Ceric.30G041600	linker histone *(H1) & original description:...	0.02	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.02	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.02	OrthoFinder output from all 47 species
MA_10436125g0020	ATTRB1, TRB1	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Msp_g10563	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g11329	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09013	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Smo27494	No alias	Chromatin organisation.histones.H1 linker histone	0.04	OrthoFinder output from all 47 species
Spa_g09322	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09323	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09324	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g18792	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g31027	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	37	101

External Links

No external refs found!

Dcu_g02558 (HIS1-3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation