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  5. Dcu_g02016

Dcu_g02016 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g02016

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00104970 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G06670 NIH nuclear DEIH-boxhelicase 0.03 OrthoFinder output from all 47 species
AT2G30800 HVT1, ATVT-1 helicase in vascular tissue and tapetum 0.03 OrthoFinder output from all 47 species
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g04487 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20539 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_13707 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os01g56190.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g02150.1 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Ore_g26937 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g044930.3.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g10294 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028983_P004 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001374 R3H_dom 26 82
IPR001650 Helicase_C 569 692
IPR011709 DEAD-box_helicase_OB_fold 917 1009
IPR007502 Helicase-assoc_dom 757 848
IPR011545 DEAD/DEAH_box_helicase_dom 197 362
IPR002110 Ankyrin_rpt 454 519
No external refs found!