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  5. Dcu_g01929

Dcu_g01929


Description : not classified & original description: none


Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01929

Target Alias Description ECC score Gene Family Method Actions
AT3G16840 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Adi_g110755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0123.g048442 No alias not classified & original description: CDS=180-2516 0.04 OrthoFinder output from all 47 species
Ceric.13G087700.1 Ceric.13G087700 not classified & original description: pacid=50636878... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.85 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Cre01.g022350 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01027957001 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Gb_06963 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43140.1 LOC_Os04g43140 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
MA_10436248g0010 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Mp5g03860.1 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Msp_g19605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63313 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g090740.4.1 Solyc09g090740 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Spa_g05351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007582_P001 Zm00001e007582 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 235 468
IPR001650 Helicase_C 534 642
No external refs found!