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  5. Dcu_g01671

Dcu_g01671


Description : not classified & original description: none


Gene families : OG0001730 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01671

Target Alias Description ECC score Gene Family Method Actions
AT1G53800 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.07 OrthoFinder output from all 47 species
Adi_g103238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19175 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08952 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0345.g065792 No alias not classified & original description: CDS=123-1853 0.03 OrthoFinder output from all 47 species
Cba_g09085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.21G079500.1 Ceric.21G079500 not classified & original description: pacid=50604458... 0.05 OrthoFinder output from all 47 species
Ceric.38G064400.1 Ceric.38G064400 not classified & original description: pacid=50580479... 0.03 OrthoFinder output from all 47 species
Ehy_g01308 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01014224001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os10g12354.1 LOC_Os10g12354 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g29045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g11885 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g42536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo439642 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g123700.4.1 Solyc03g123700 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g24050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032593_P001 Zm00001e032593 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003611 NUMOD3 197 215
IPR003611 NUMOD3 253 280
No external refs found!