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  5. Dcu_g01421

Dcu_g01421


Description : not classified & original description: none


Gene families : OG0005176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g01421

Target Alias Description ECC score Gene Family Method Actions
Als_g11467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G067100.1 Ceric.36G067100 not classified & original description: pacid=50569205... 0.04 OrthoFinder output from all 47 species
Tin_g07458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 385 405
IPR002885 Pentatricopeptide_repeat 454 477
IPR002885 Pentatricopeptide_repeat 211 239
IPR002885 Pentatricopeptide_repeat 420 447
IPR002885 Pentatricopeptide_repeat 247 287
No external refs found!