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  5. Spa_g57014

Spa_g57014 (ATDRH1, DRH1)


Aliases : ATDRH1, DRH1

Description : not classified & original description: none


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g57014
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Aop_g09685 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001049.35 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dac_g12501 ATDRH1, DRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g25686 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Gb_10302 ATDRH1, DRH1 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_23629 No alias pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Lfl_g39840 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.03 OrthoFinder output from all 47 species
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Nbi_g14167 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15938 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c11_24910V3.1 ATDRH1, DRH1,... DEAD box RNA helicase 1 0.01 OrthoFinder output from all 47 species
Sam_g24783 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Sam_g29066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g044860.3.1 Solyc12g044860 DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e016546_P001 Zm00001e016546 pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Zm00001e020727_P006 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 19 49
IPR001650 Helicase_C 583 688
IPR011545 DEAD/DEAH_box_helicase_dom 373 543
No external refs found!