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  5. Spa_g56789

Spa_g56789 (SDE3)


Aliases : SDE3

Description : not classified & original description: none


Gene families : OG0002062 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56789

Target Alias Description ECC score Gene Family Method Actions
Aob_g31798 SDE3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23614 SDE3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 202 223
IPR046439 ZF_RZ_dom 2044 2097
IPR041677 DNA2/NAM7_AAA_11 1056 1158
IPR041677 DNA2/NAM7_AAA_11 659 874
IPR000270 PB1_dom 29 118
IPR041679 DNA2/NAM7-like_C 1169 1371
IPR041367 Znf-CCCH_4 146 165
No external refs found!