Spa_g56194 (BUM1, SHL, STM, WAM, WAM1, BUM)

Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: none

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g56194

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00026p00162850	KNAT3,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.02	OrthoFinder output from all 47 species
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.03	OrthoFinder output from all 47 species
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT5G25220	KNAT3	KNOTTED1-like homeobox gene 3	0.03	OrthoFinder output from all 47 species
Ala_g05964	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g13443	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05650	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g05224	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g29252	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.13G020400.1	KNAT3, Ceric.13G020400	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cre08.g375400	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.01	OrthoFinder output from all 47 species
Ehy_g12162	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007715001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01012897001	KNAT3	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01031241001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os03g47022.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os03g51710.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
LOC_Os05g03884.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os07g03770.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
MA_3582g0010	KNAT3	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Msp_g30494	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g44272	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g27135	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19225	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25529	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25530	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g10115	KNAT4	KNOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g18663	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026748	KNAT3	KNOX-type transcription factor & original description: CDS=1-885	0.03	OrthoFinder output from all 47 species
Solyc02g081120.4.1	BUM1, SHL, STM,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Solyc08g041820.3.1	KNAT3, Solyc08g041820	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Solyc12g010410.3.1	KNAT4, Solyc12g010410	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Spa_g22911	KNAT3	KNOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g10831	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005545_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Zm00001e005547_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e011538_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e017489_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e029453_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	242	262
IPR005541	KNOX2	133	178
IPR005540	KNOX1	82	121
IPR008422	Homeobox_KN_domain	281	320

External Links

No external refs found!

Spa_g56194 (BUM1, SHL, STM, WAM, WAM1, BUM)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation