1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g55822

Spa_g55822 (RPS4)


Aliases : RPS4

Description : not classified & original description: none


Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g55822

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.04 OrthoFinder output from all 47 species
Aev_g09926 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g45669 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g03407 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aob_g03663 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38513 RPS4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77949 RPS4 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.02G013600.1 RPS4, Ceric.02G013600 component *(uS4c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.09G048000.1 RPS4, Ceric.09G048000 component *(uS4c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Gb_11360 RPS4 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os04g16738.1 RPS4, LOC_Os04g16738 component psRPS4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os04g16764.1 RPS4, LOC_Os04g16764 component psRPS4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os10g38214.1 RPS4, LOC_Os10g38214 component psRPS4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Nbi_g01687 RPS4 not classified & original description: none 0.14 OrthoFinder output from all 47 species
Ore_g23778 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc09g015330.2.1 Solyc09g015330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g022610.1.1 RPS4, Solyc11g022610 30S ribosomal protein S4, chloroplastic OS=Solanum... 0.03 OrthoFinder output from all 47 species
Zm00001e003895_P001 RPS4, Zm00001e003895 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e003908_P001 RPS4, Zm00001e003908 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042033_P001 RPS4, Zm00001e042033 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042054_P001 RPS4, Zm00001e042054 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042078_P001 RPS4, Zm00001e042078 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042098_P001 RPS4, Zm00001e042098 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042353_P001 RPS4, Zm00001e042353 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042773 ATP synthesis coupled electron transport IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 117 163
No external refs found!