1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g55808

Spa_g55808


Description : large subunit gamma of AP-1 trans-Golgi network cargo adaptor complex & original description: none


Gene families : OG0002603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002603_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g55808

Target Alias Description ECC score Gene Family Method Actions
AT1G60070 No alias Adaptor protein complex AP-1, gamma subunit 0.07 OrthoFinder output from all 47 species
Adi_g008187 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Aev_g07309 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Ala_g14098 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Als_g14323 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Cba_g15244 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ceric.1Z105200.1 Ceric.1Z105200 large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ceric.37G015500.1 GAMMA-ADAPTIN 1,... not classified & original description: pacid=50616075... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.33 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Cre16.g676650 GAMMA-ADAPTIN 1,... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
Dcu_g01942 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species
GSVIVT01020209001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 OrthoFinder output from all 47 species
Gb_02741 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
LOC_Os02g56110.1 LOC_Os02g56110 large subunit gamma of AP-1 trans-Golgi network cargo... 0.1 OrthoFinder output from all 47 species
LOC_Os06g07090.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species
Len_g40020 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Lfl_g22120 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
MA_675g0010 No alias AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp2g02140.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Msp_g09172 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Nbi_g04417 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.11 OrthoFinder output from all 47 species
Ore_g15695 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Smo168054 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Solyc04g025870.4.1 Solyc04g025870 large subunit gamma of AP-1 trans-Golgi network cargo... 0.1 OrthoFinder output from all 47 species
Solyc05g005780.3.1 Solyc05g005780 large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Tin_g02865 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Zm00001e023661_P002 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 OrthoFinder output from all 47 species
Zm00001e030101_P002 Zm00001e030101 large subunit gamma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Zm00001e036396_P001 Zm00001e036396 large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 778 892
IPR002553 Clathrin/coatomer_adapt-like_N 22 571
No external refs found!