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  5. Spa_g54226

Spa_g54226 (ATCPL1, CPL1, FRY2)


Aliases : ATCPL1, CPL1, FRY2

Description : subcluster CPL phosphatase & original description: none


Gene families : OG0002263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54226
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00267690 ATCPL1, CPL1,... Protein modification.dephosphorylation.aspartate-based... 0.03 OrthoFinder output from all 47 species
AT4G21670 ATCPL1, CPL1, FRY2 C-terminal domain phosphatase-like 1 0.04 OrthoFinder output from all 47 species
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 0.02 OrthoFinder output from all 47 species
Ala_g07037 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14449 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13452 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12939 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0115.g046235 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: CDS=1135-3993 0.02 OrthoFinder output from all 47 species
Ceric.03G049400.1 ATCPL1, CPL1,... subcluster CPL phosphatase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.07G074800.1 ATCPL1, CPL1,... subcluster CPL phosphatase & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g07780 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01006447001 ATCPL1, CPL1, FRY2 RNA polymerase II C-terminal domain phosphatase-like 1... 0.04 OrthoFinder output from all 47 species
GSVIVT01006448001 ATCPL1, CPL1, FRY2 Protein modification.dephosphorylation.aspartate-based... 0.04 OrthoFinder output from all 47 species
LOC_Os01g63820.1 CPL2, ATCPL2,... RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
LOC_Os04g44710.1 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
Len_g12188 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03473 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g03481 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.1 OrthoFinder output from all 47 species
MA_10433618g0010 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
MA_18750g0010 ATCPL1, CPL1, FRY2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_18750g0020 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase 0.03 OrthoFinder output from all 47 species
Mp4g06900.1 ATCPL1, CPL1, FRY2 RNA polymerase-II phosphatase. CPL phosphatase 0.03 OrthoFinder output from all 47 species
Msp_g07706 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g01492 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30260 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12247 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g01363 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29272 No alias subcluster CPL phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06700 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015225_P001 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004274 FCP1_dom 258 371
IPR014720 dsRBD_dom 860 919
IPR014720 dsRBD_dom 721 775
No external refs found!