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  5. Spa_g54159

Spa_g54159


Description : component *(Snu13) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54159

Target Alias Description ECC score Gene Family Method Actions
Aop_g04016 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.06 OrthoFinder output from all 47 species
Ceric.03G071600.1 Ceric.03G071600 component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000600.11 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Dac_g02506 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Dac_g29609 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
MA_10201g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species
Tin_g30682 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e001004_P001 Zm00001e001004 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 30 116
No external refs found!