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  4. Sequence
  5. Spa_g53562

Spa_g53562


Description : not classified & original description: none


Gene families : OG0000181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g53562
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Aop_g30977 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05451.t1 ATGRAS2, SCL14,... GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05452.t1 ATGRAS2, SCL14,... GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24615.t1 ATGRAS2, SCL14,... GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24616.t1 ATGRAS2, SCL14,... GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72741 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g06297 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35446 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45009 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09269 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g17618 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23316 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15158 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024932001 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
Gb_29764 No alias transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Len_g55534 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14201 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47996 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08951 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo80549 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Solyc06g076280.3.1 ATGRAS2, SCL14,... transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Spa_g22215 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020943_P001 Zm00001e020943 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 149 214
No external refs found!