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  5. Spa_g52342

Spa_g52342 (emb1507)


Aliases : emb1507

Description : RNA helicase *(Brr2) & original description: none


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g52342

Target Alias Description ECC score Gene Family Method Actions
Adi_g085426 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01991 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08117 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05989 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.31G022500.1 emb1507, Ceric.31G022500 RNA helicase *(Brr2) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.28 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.29 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12406 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04070 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.03 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Len_g08641 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Ore_g25813 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007145 No alias RNA helicase *(Brr2) & original description: CDS=159-5693 0.03 OrthoFinder output from all 47 species
Sam_g18045 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Smo144158 emb1507 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Solyc06g071620.3.1 emb1507, Solyc06g071620 RNA helicase (Brr2) 0.01 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.04 OrthoFinder output from all 47 species
Spa_g39786 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07743 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.02 OrthoFinder output from all 47 species
Zm00001e038727_P001 Zm00001e038727 DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041094 Brr2_helicase_PWI 266 375
IPR001650 Helicase_C 740 880
IPR011545 DEAD/DEAH_box_helicase_dom 505 680
IPR011545 DEAD/DEAH_box_helicase_dom 1351 1519
IPR004179 Sec63-dom 1837 2155
IPR004179 Sec63-dom 1004 1306
No external refs found!