Spa_g50934 (HIS1-3)

Aliases : HIS1-3

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g50934

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.02	OrthoFinder output from all 47 species
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT2G30620	No alias	winged-helix DNA-binding transcription factor family protein	0.03	OrthoFinder output from all 47 species
Adi_g052669	No alias	linker histone *(H1) & original description: none	0.11	OrthoFinder output from all 47 species
Adi_g104846	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g23326	HIS1-3	linker histone *(H1) & original description: none	0.13	OrthoFinder output from all 47 species
Aop_g05135	HIS1-3	linker histone *(H1) & original description: none	0.11	OrthoFinder output from all 47 species
Aop_g36461	HIS1-3	linker histone *(H1) & original description: none	0.14	OrthoFinder output from all 47 species
Aspi01Gene42128.t1	HIS1-3, Aspi01Gene42128	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G101000.1	HIS1-3, Ceric.05G101000	linker histone *(H1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.17G067800.1	HIS1-3, Ceric.17G067800	linker histone *(H1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.30G028200.1	HIS1-3, Ceric.30G028200	linker histone *(H1) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.30G041600.1	Ceric.30G041600	linker histone *(H1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.34G011100.1	HIS1-3, Ceric.34G011100	linker histone *(H1) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020780.71	HIS1-3	No description available	0.07	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.05	OrthoFinder output from all 47 species
Dac_g20797	HIS1-3	linker histone *(H1) & original description: none	0.17	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g23302	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05478	No alias	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Gb_03348	HIS1-3	linker histone (H1)	0.04	OrthoFinder output from all 47 species
LOC_Os04g18090.1	HIS1-3, LOC_Os04g18090	linker histone (H1)	0.04	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.09	OrthoFinder output from all 47 species
Len_g04604	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g14042	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g23782	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Len_g54319	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_102457g0010	No alias	linker histone (H1)	0.05	OrthoFinder output from all 47 species
MA_10436125g0020	ATTRB1, TRB1	linker histone (H1)	0.03	OrthoFinder output from all 47 species
MA_500183g0010	HIS1-3	linker histone (H1)	0.04	OrthoFinder output from all 47 species
MA_877599g0010	No alias	linker histone (H1)	0.06	OrthoFinder output from all 47 species
Msp_g09818	HIS1-3	linker histone *(H1) & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g04093	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g10947	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c18_14270V3.1	Pp3c18_14270	winged-helix DNA-binding transcription factor family protein	0.06	OrthoFinder output from all 47 species
Sam_g11041	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc09g066100.3.1	Solyc09g066100	linker histone (H1)	0.05	OrthoFinder output from all 47 species
Solyc09g083380.4.1	Solyc09g083380	linker histone (H1)	0.09	OrthoFinder output from all 47 species
Tin_g01715	HIS1-3	linker histone *(H1) & original description: none	0.08	OrthoFinder output from all 47 species
Zm00001e006018_P006	Zm00001e006018	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.09	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000796	condensin complex	IEP	HCCA
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	40	106

External Links

No external refs found!

Spa_g50934 (HIS1-3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation