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  5. Spa_g49772

Spa_g49772


Description : not classified & original description: none


Gene families : OG0001011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001011_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g49772

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00133150 evm_27.TU.AmTr_v1... Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G46110 No alias Domain of unknown function (DUF966) 0.03 OrthoFinder output from all 47 species
AT5G10150 No alias Domain of unknown function (DUF966) 0.03 OrthoFinder output from all 47 species
Adi_g106265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15972 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g22133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18845.t1 Aspi01Gene18845 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34495.t1 Aspi01Gene34495 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58852.t1 Aspi01Gene58852 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58853.t1 Aspi01Gene58853 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010179 No alias not classified & original description: CDS=245-2059 0.03 OrthoFinder output from all 47 species
Ceric.10G058400.1 Ceric.10G058400 not classified & original description: pacid=50611779... 0.04 OrthoFinder output from all 47 species
Dac_g16699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49111 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g18589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g74370.1 LOC_Os01g74370 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g44760.1 LOC_Os08g44760 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g18739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_3651g0010 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g13130.1 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g13652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39402 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g04028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60880 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010278 No alias not classified & original description: CDS=116-3175 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0178.g024671 No alias not classified & original description: CDS=409-2136 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0192.g025363 No alias not classified & original description: CDS=123-2075 0.04 OrthoFinder output from all 47 species
Smo412562 No alias Protein UPSTREAM OF FLC OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc06g030470.4.1 Solyc06g030470 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc06g075690.3.1 Solyc06g075690 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g06916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005317_P002 Zm00001e005317 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e019641_P005 Zm00001e019641 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e022043_P001 Zm00001e022043 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e028781_P001 Zm00001e028781 Protein UPSTREAM OF FLC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR010369 SOK 19 277
No external refs found!