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  5. Spa_g48300

Spa_g48300 (RP1, RPL3A, emb2207, ARP1)


Aliases : RP1, RPL3A, emb2207, ARP1

Description : not classified & original description: none


Gene families : OG0001891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g48300
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00269670 RP1, RPL3A,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00060p00174830 RP1, RPL3A,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AMTR_s00135p00091990 RP1, RPL3A,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.15 OrthoFinder output from all 47 species
AT1G61580 RPL3B, ARP2 R-protein L3 B 0.03 OrthoFinder output from all 47 species
Adi_g011360 RP1, RPL3A, emb2207, ARP1 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g045425 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g105187 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g04821 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g32693 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g45269 RPL3B, ARP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10507 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Aop_g11770 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aspi01Gene27299.t1 RPL3B, ARP2,... component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013966 RP1, RPL3A, emb2207, ARP1 component *(uL3) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Azfi_s0113.g045879 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Cba_g12982 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g24008 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.22G040700.1 RPL3B, ARP2,... component *(uL3) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.26G061200.1 RPL3B, ARP2,... component *(uL3) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000025.50 RPL3B, ARP2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Cre10.g417700 RP1, RPL3A, emb2207, ARP1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Dac_g13025 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dde_g24590 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g49884 RPL3B, ARP2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g06618 RP1, RPL3A, emb2207, ARP1 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g06763 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01023241001 RPL3B, ARP2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01034555001 RP1, RPL3A, emb2207, ARP1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Gb_11963 RP1, RPL3A, emb2207, ARP1 component RPL3 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Gb_35746 RP1, RPL3A, emb2207, ARP1 component RPL3 of LSU proteome component 0.14 OrthoFinder output from all 47 species
LOC_Os11g06750.1 RP1, RPL3A,... component RPL3 of LSU proteome component 0.14 OrthoFinder output from all 47 species
LOC_Os12g07010.1 RP1, RPL3A,... component RPL3 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Len_g18215 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Len_g28843 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_10432758g0010 RP1, RPL3A, emb2207, ARP1 component RPL3 of LSU proteome component 0.12 OrthoFinder output from all 47 species
MA_124178g0010 RPL3B, ARP2 component RPL3 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Mp1g18990.1 RPL3B, ARP2 component RPL3 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Msp_g08488 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Msp_g35553 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g04174 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g07397 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g42353 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g36885 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c10_25460V3.1 RPL3B, ARP2, Pp3c10_25460 R-protein L3 B 0.05 OrthoFinder output from all 47 species
Ppi_g32376 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007060 ATHSP70, HSP70 chaperone *(Hsp70) & original description: CDS=161-3865 0.04 OrthoFinder output from all 47 species
Sam_g04295 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sam_g09820 No alias component *(uL3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g09821 No alias component *(uL3) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g40822 No alias component *(uL3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g51012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo270706 RP1, RPL3A, emb2207, ARP1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Solyc01g104590.3.1 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Spa_g10027 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Tin_g00740 RPL3B, ARP2 component *(uL3) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Zm00001e001224_P002 RP1, RPL3A,... component RPL3 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e008122_P001 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e008127_P001 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Zm00001e009061_P001 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Zm00001e009065_P002 RPL3B, ARP2,... component RPL3 of LSU proteome component 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 140
No external refs found!