1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g47784

Spa_g47784


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g47784
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00004p00121730 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07470 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0182.g056457 No alias not classified & original description: CDS=29-2320 0.04 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.05 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g16369 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_10436637g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_92056g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g48141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21326 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g13061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16078 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g38066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Tin_g08252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 307 376
IPR000504 RRM_dom 387 450
IPR000504 RRM_dom 484 548
No external refs found!