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  5. Spa_g47611

Spa_g47611


Description : microtubule-stabilizing factor *(WDL) & original description: none


Gene families : OG0000418 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000418_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g47611

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00263250 evm_27.TU.AmTr_v1... Cytoskeleton.microtubular network.microtubule... 0.04 OrthoFinder output from all 47 species
Ala_g25469 No alias microtubule-stabilizing factor *(WDL) & original... 0.2 OrthoFinder output from all 47 species
Als_g05641 No alias microtubule-stabilizing factor *(WDL) & original... 0.07 OrthoFinder output from all 47 species
Aob_g32079 No alias microtubule-stabilizing factor *(WDL) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11564.t1 Aspi01Gene11564 microtubule-stabilizing factor *(WDL) & original... 0.1 OrthoFinder output from all 47 species
Aspi01Gene11565.t1 Aspi01Gene11565 microtubule-stabilizing factor *(WDL) & original... 0.09 OrthoFinder output from all 47 species
Aspi01Gene32489.t1 Aspi01Gene32489 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Azfi_s0013.g013383 No alias microtubule-stabilizing factor *(WDL) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0099.g044176 No alias microtubule-stabilizing factor *(WDL) & original... 0.1 OrthoFinder output from all 47 species
Ceric.02G109600.1 Ceric.02G109600 microtubule-stabilizing factor *(WDL) & original... 0.19 OrthoFinder output from all 47 species
Dcu_g11946 No alias microtubule-stabilizing factor *(WDL) & original... 0.03 OrthoFinder output from all 47 species
Len_g01303 No alias microtubule-stabilizing factor *(WDL) & original... 0.08 OrthoFinder output from all 47 species
MA_20109g0010 No alias microtubule-stabilizing factor (WDL) 0.03 OrthoFinder output from all 47 species
Msp_g09168 No alias microtubule-stabilizing factor *(WDL) & original... 0.18 OrthoFinder output from all 47 species
Nbi_g24171 No alias microtubule-stabilizing factor *(WDL) & original... 0.2 OrthoFinder output from all 47 species
Pp3c20_13190V3.1 Pp3c20_13190 TPX2 (targeting protein for Xklp2) protein family 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009920 No alias microtubule-stabilizing factor *(WDL) & original... 0.03 OrthoFinder output from all 47 species
Sam_g10590 No alias microtubule-stabilizing factor *(WDL) & original... 0.04 OrthoFinder output from all 47 species
Tin_g13057 No alias microtubule-stabilizing factor *(WDL) & original... 0.13 OrthoFinder output from all 47 species
Tin_g45028 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e006019_P002 Zm00001e006019 microtubule-stabilizing factor (WDL) 0.03 OrthoFinder output from all 47 species
Zm00001e011856_P006 Zm00001e011856 microtubule-stabilizing factor (WDL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR027329 TPX2_C 277 346
No external refs found!