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  5. Spa_g46777

Spa_g46777


Description : not classified & original description: none


Gene families : OG0000762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g46777
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AT1G75700 HVA22G HVA22-like protein G 0.03 OrthoFinder output from all 47 species
Als_g12846 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g69314 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
GSVIVT01009889001 No alias HVA22-like protein i OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g14610.1 LOC_Os03g14610 Putative HVA22-like protein g OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os10g09870.1 LOC_Os10g09870 HVA22-like protein i OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g24583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g38479 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_12086g0010 No alias HVA22-like protein i OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g05801 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g09150 HVA22J not classified & original description: none 0.15 OrthoFinder output from all 47 species
Sam_g14694 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e001050_P001 Zm00001e001050 HVA22-like protein i OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR004345 TB2_DP1_HVA22 19 97
No external refs found!