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  5. Spa_g46425

Spa_g46425


Description : histone *(H2B) & original description: none


Gene families : OG0000176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g46425

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00145460 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder output from all 47 species
AT1G07790 HTB1 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G09480 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G45980 HTB9, H2B Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g021198 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g032961 HTB4 histone *(H2B) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g068717 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g264900 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276550 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre13.g570050 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g709150 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g710450 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g711750 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g713450 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g714050 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Gb_12096 No alias histone (H2B) 0.03 OrthoFinder output from all 47 species
LOC_Os01g06010.1 HTB11, LOC_Os01g06010 histone (H2B) 0.03 OrthoFinder output from all 47 species
LOC_Os08g38300.1 HTB11, LOC_Os08g38300 histone (H2B) 0.04 OrthoFinder output from all 47 species
MA_10436516g0020 HTB11 histone (H2B) 0.03 OrthoFinder output from all 47 species
MA_17795g0010 HTB11 histone (H2B) 0.03 OrthoFinder output from all 47 species
MA_9293473g0010 HTB11 histone (H2B) 0.04 OrthoFinder output from all 47 species
Pp3c17_15750V3.1 HTB4, Pp3c17_15750 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Sam_g29961 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g055440.1.1 HTB11, Solyc05g055440 histone (H2B) 0.05 OrthoFinder output from all 47 species
Solyc06g075800.1.1 HTB11, Solyc06g075800 histone (H2B) 0.03 OrthoFinder output from all 47 species
Solyc11g007920.1.1 HTB11, Solyc11g007920 histone (H2B) 0.04 OrthoFinder output from all 47 species
Spa_g32990 HTB4 histone *(H2B) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45813 HTB4 histone *(H2B) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g52508 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020484_P002 HTB1, Zm00001e020484 histone (H2B) 0.04 OrthoFinder output from all 47 species
Zm00001e022201_P001 HTB11, Zm00001e022201 histone (H2B) 0.03 OrthoFinder output from all 47 species
Zm00001e027803_P001 HTB11, Zm00001e027803 histone (H2B) 0.02 OrthoFinder output from all 47 species
Zm00001e038466_P001 HTB1, Zm00001e038466 histone (H2B) 0.03 OrthoFinder output from all 47 species
Zm00001e039057_P002 HTB11, Zm00001e039057 histone (H2B) 0.02 OrthoFinder output from all 47 species
Zm00001e041296_P001 HTB11, Zm00001e041296 histone (H2B) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 30 152
No external refs found!