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  5. Spa_g46273

Spa_g46273 (ECT5)


Aliases : ECT5

Description : methylation reader *(ECT) & original description: none


Gene families : OG0000330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g46273

Target Alias Description ECC score Gene Family Method Actions
Adi_g061121 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076980 ECT2 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06040 ECT5 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18337 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11511 ECT5 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19226 ECT5 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0002.g001336 ECT8 methylation reader *(ECT) & original description: CDS=120-1922 0.04 OrthoFinder output from all 47 species
Cba_g20530 ECT8 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26970 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38037 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g70631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12036 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16306 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09175 ECT8 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07823 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032236001 ECT5 No description available 0.04 OrthoFinder output from all 47 species
Gb_17619 ECT2 methylation reader (ECT) 0.01 OrthoFinder output from all 47 species
LOC_Os03g06240.1 ECT4, LOC_Os03g06240 methylation reader (ECT) 0.02 OrthoFinder output from all 47 species
Len_g00742 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02026 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25072 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03142 ECT7 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09604 ECT3 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42419 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15679 ECT5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03151 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g028860.3.1 ECT2, Solyc01g028860 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Solyc01g103540.3.1 ECT11, Solyc01g103540 methylation reader (ECT) 0.02 OrthoFinder output from all 47 species
Tin_g12437 ECT7 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e039003_P004 ECT2, Zm00001e039003 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 3 58
No external refs found!