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  5. Spa_g42101

Spa_g42101


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g42101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
AT1G02080 No alias transcription regulators 0.03 OrthoFinder output from all 47 species
Ala_g12815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Als_g17486 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aop_g06241 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g12926 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ehy_g17663 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Ore_g16116 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Pir_g16782 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ppi_g22265 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0261.g026893 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g40588 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007196 CCR4-Not_Not1_C 2055 2423
IPR032193 CNOT1_TTP_bind 641 807
IPR032191 CNOT1_CAF1_bind 965 1184
IPR032194 CNOT1_HEAT 464 612
IPR024557 CNOT1_dom_4 1313 1454
No external refs found!