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  5. Spa_g41396

Spa_g41396


Description : GRAS-type transcription factor & original description: none


Gene families : OG0000181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g41396

Target Alias Description ECC score Gene Family Method Actions
Adi_g054835 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13650 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17448 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32092 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26224 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55308 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16795 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25508 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30977 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37652.t1 ATGRAS2, SCL14,... GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72630.t1 Aspi01Gene72630 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10278 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20539 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09269 No alias GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g09270 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43755 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09496 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17618 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15158 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016522001 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
GSVIVT01016523001 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Gb_29764 No alias transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g09278 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g32687 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13206 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_45656g0030 ATGRAS2, SCL14, GRAS2 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Nbi_g08951 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18536 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24963 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g41194 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05662 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15664 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16478 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0203.g025658 No alias GRAS-type transcription factor & original description: CDS=1-2280 0.03 OrthoFinder output from all 47 species
Smo74605 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Smo80549 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Spa_g19021 No alias GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51476 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11546 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0047746 chlorophyllase activity IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 292 547
No external refs found!