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  5. Spa_g41103

Spa_g41103


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0006591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g41103
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g25351 No alias plastidial RNA processing factor *(PPR287) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene44048.t1 Aspi01Gene44048 plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0074.g037533 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G093600.1 Ceric.05G093600 plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g13401 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.03 OrthoFinder output from all 47 species
LOC_Os08g09270.1 LOC_Os08g09270 plastidial RNA processing factor (PPR287) 0.02 OrthoFinder output from all 47 species
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.04 OrthoFinder output from all 47 species
Nbi_g30607 No alias plastidial RNA processing factor *(PPR287) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g13097 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Solyc07g043600.4.1 Solyc07g043600 plastidial RNA processing factor (PPR287) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 192 215
IPR002885 Pentatricopeptide_repeat 499 527
IPR002885 Pentatricopeptide_repeat 288 333
IPR002885 Pentatricopeptide_repeat 217 266
IPR002885 Pentatricopeptide_repeat 425 473
IPR002885 Pentatricopeptide_repeat 344 403
No external refs found!