1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g39340

Spa_g39340


Description : not classified & original description: none


Gene families : OG0000273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000273_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g39340
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00200060 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00051500 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
AT1G03050 No alias ENTH/ANTH/VHS superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G02650 No alias ENTH/ANTH/VHS superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g055262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49324.t1 Aspi01Gene49324 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.24G079400.1 Ceric.24G079400 not classified & original description: pacid=50629491... 0.03 OrthoFinder output from all 47 species
GSVIVT01023714001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
GSVIVT01029746001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
LOC_Os05g02140.1 LOC_Os05g02140 ECA1/2 clathrin coated vesicle adaptor protein 0.04 OrthoFinder output from all 47 species
Msp_g44180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g33181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g049380.1.1 Solyc07g049380 clathrin assembly protein (AP180) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR011417 ANTH_dom 33 332
No external refs found!