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  5. Spa_g39328

Spa_g39328


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g39328

Target Alias Description ECC score Gene Family Method Actions
Aev_g20068 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09138 CIP111 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g33031 No alias platform ATPase CDC48 & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0178.g056166 No alias platform ATPase CDC48 & original description: CDS=301-2751 0.04 OrthoFinder output from all 47 species
Azfi_s0210.g058064 No alias platform ATPase CDC48 & original description: CDS=1-2484 0.03 OrthoFinder output from all 47 species
Ceric.16G049300.1 CDC48B, Ceric.16G049300 platform ATPase CDC48 & original description:... 0.03 OrthoFinder output from all 47 species
Cre06.g269950 No alias Cell division control protein 48 homolog E... 0.02 OrthoFinder output from all 47 species
Dcu_g08248 No alias platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01010343001 emb1354, CDC48C Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Lfl_g39791 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g02450.1 No alias platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Msp_g06020 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 136 199
IPR015415 Vps4_C 730 768
IPR003959 ATPase_AAA_core 522 655
IPR003959 ATPase_AAA_core 249 378
IPR003338 CDC4_N-term_subdom 34 115
IPR041569 AAA_lid_3 401 443
IPR041569 AAA_lid_3 677 717
No external refs found!