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  5. Spa_g37488

Spa_g37488 (ATRAD54, CHR25, RAD54)


Aliases : ATRAD54, CHR25, RAD54

Description : chromatin remodeling factor *(RAD54) & original description: none


Gene families : OG0003309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g37488
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Adi_g085241 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G046200.1 ATRAD54, CHR25,... chromatin remodeling factor *(RAD54) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.39 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cre10.g430950 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g39643 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.07 OrthoFinder output from all 47 species
Gb_22245 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52510.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.03 OrthoFinder output from all 47 species
Mp6g06120.1 ATRAD54, CHR25, RAD54 chromatin remodeling factor (Rad54) 0.06 OrthoFinder output from all 47 species
Solyc04g056410.3.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.04 OrthoFinder output from all 47 species
Tin_g45162 ATRAD54, CHR25, RAD54 chromaTin remodeling factor *(RAD54) & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 563 672
IPR000330 SNF2_N 203 513
No external refs found!