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  5. Spa_g37487

Spa_g37487


Description : not classified & original description: none


Gene families : OG0007313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007313_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g37487
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00112500 evm_27.TU.AmTr_v1... ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
AT1G27880 No alias DEAD/DEAH box RNA helicase family protein 0.05 OrthoFinder output from all 47 species
Als_g50301 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54798.t1 Aspi01Gene54798 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0104.g044748 No alias not classified & original description: CDS=162-4085 0.08 OrthoFinder output from all 47 species
Ceric.33G047600.1 Ceric.33G047600 not classified & original description: pacid=50606429... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.41 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre15.g634701 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g34327 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01010342001 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os04g40970.1 LOC_Os04g40970 ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g58861 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Mp6g05780.1 No alias ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Nbi_g09957 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021809 No alias not classified & original description: CDS=1-3792 0.06 OrthoFinder output from all 47 species
Solyc05g014690.3.1 Solyc05g014690 ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e041104_P001 Zm00001e041104 ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 671 833
IPR003034 SAP_dom 399 431
IPR001650 Helicase_C 871 978
IPR021110 DNA_rep_checkpnt_protein 12 128
No external refs found!