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  5. Spa_g32022

Spa_g32022 (CDC48A, CDC48, ATCDC48)


Aliases : CDC48A, CDC48, ATCDC48

Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g32022
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Ala_g14618 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Als_g35911 emb1354, CDC48C not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g04257 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32745 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13202 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53020 emb1354, CDC48C not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008174 mRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 692 727
IPR041569 AAA_lid_3 415 456
IPR003338 CDC4_N-term_subdom 47 126
IPR015415 Vps4_C 753 786
IPR003959 ATPase_AAA_core 536 669
IPR003959 ATPase_AAA_core 263 392
No external refs found!