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  5. Spa_g30973

Spa_g30973


Description : protein factor (NERD) of non-canonical RdDM pathway & original description: none


Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30973
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00244500 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.02 OrthoFinder output from all 47 species
AT2G16485 No alias nucleic acid binding;zinc ion binding;DNA binding 0.03 OrthoFinder output from all 47 species
AT3G51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.05 OrthoFinder output from all 47 species
Adi_g026023 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35223 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g03906 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Aob_g19106 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Cba_g23748 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Ceric.03G088800.1 Ceric.03G088800 not classified & original description: pacid=50572957... 0.04 OrthoFinder output from all 47 species
Ceric.09G099900.1 Ceric.09G099900 protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Dde_g41545 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g05103 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
GSVIVT01024181001 No alias Zinc finger CCCH domain-containing protein 19... 0.04 OrthoFinder output from all 47 species
LOC_Os09g36090.1 LOC_Os09g36090 protein factor (NERD) of non-canonical RdDM pathway 0.03 OrthoFinder output from all 47 species
LOC_Os10g36810.1 LOC_Os10g36810 protein factor (NERD) of non-canonical RdDM pathway 0.02 OrthoFinder output from all 47 species
Len_g13930 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Lfl_g05726 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Lfl_g06273 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Lfl_g35904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_116694g0010 No alias Zinc finger CCCH domain-containing protein 19... 0.04 OrthoFinder output from all 47 species
MA_12806g0020 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 OrthoFinder output from all 47 species
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 OrthoFinder output from all 47 species
Msp_g38424 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Nbi_g14762 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Nbi_g34438 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Ore_g10283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16785 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Ore_g20501 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Ore_g45316 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g45456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06499 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Pir_g12625 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.08 OrthoFinder output from all 47 species
Ppi_g49417 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Ppi_g58382 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.05 OrthoFinder output from all 47 species
Sam_g52359 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.06 OrthoFinder output from all 47 species
Solyc02g084510.3.1 Solyc02g084510 Zinc finger CCCH domain-containing protein 44... 0.02 OrthoFinder output from all 47 species
Solyc03g033630.3.1 Solyc03g033630 Zinc finger CCCH domain-containing protein 44... 0.04 OrthoFinder output from all 47 species
Solyc11g062220.2.1 Solyc11g062220 Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
Tin_g09943 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.09 OrthoFinder output from all 47 species
Tin_g43997 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.04 OrthoFinder output from all 47 species
Zm00001e000091_P002 Zm00001e000091 protein factor (NERD) of non-canonical RdDM pathway 0.07 OrthoFinder output from all 47 species
Zm00001e004378_P003 Zm00001e004378 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Zm00001e012555_P003 Zm00001e012555 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Zm00001e019791_P001 Zm00001e019791 protein factor (NERD) of non-canonical RdDM pathway 0.06 OrthoFinder output from all 47 species
Zm00001e027036_P001 Zm00001e027036 Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
Zm00001e029059_P002 Zm00001e029059 protein factor (NERD) of non-canonical RdDM pathway 0.05 OrthoFinder output from all 47 species
Zm00001e039077_P001 Zm00001e039077 protein factor (NERD) of non-canonical RdDM pathway 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003169 GYF 1302 1342
IPR004343 Plus-3_dom 896 998
IPR003121 SWIB_MDM2_domain 761 834
No external refs found!