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  5. Spa_g30945

Spa_g30945 (ATPRP40C, PRP40C)


Aliases : ATPRP40C, PRP40C

Description : pre-mRNA-processing protein *(PRP40C) & original description: none


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30945

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00103360 ATPRP40C,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Ala_g06832 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.06 OrthoFinder output from all 47 species
Als_g05123 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Aop_g08237 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Cba_g01325 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ceric.13G036100.1 ATPRP40C,... pre-mRNA-processing protein *(PRP40C) & original... 0.08 OrthoFinder output from all 47 species
Cre09.g393551 ATPRP40C, PRP40C No description available 0.02 OrthoFinder output from all 47 species
Dac_g07036 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g14070 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g19140 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01010209001 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.05 OrthoFinder output from all 47 species
Len_g09020 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g02397 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
MA_10430753g0010 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.04 OrthoFinder output from all 47 species
Mp5g09830.1 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species
Nbi_g03206 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Ore_g35746 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Pir_g11410 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g32127 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Smo439648 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.06 OrthoFinder output from all 47 species
Tin_g06690 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012643_P002 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 549 574
IPR002713 FF_domain 758 806
IPR002713 FF_domain 894 941
IPR002713 FF_domain 825 872
No external refs found!