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  5. Spa_g30890

Spa_g30890 (TPR16)


Aliases : TPR16

Description : not classified & original description: none


Gene families : OG0001935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30890

Target Alias Description ECC score Gene Family Method Actions
AT5G12430 TPR16 Heat shock protein DnaJ with tetratricopeptide repeat 0.02 OrthoFinder output from all 47 species
Adi_g087246 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12835 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04505 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.31G035700.1 TPR16, Ceric.31G035700 not classified & original description: pacid=50573879... 0.03 OrthoFinder output from all 47 species
Dcu_g12352 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g31056.1 TPR16, LOC_Os05g31056 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g16220.1 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g13324 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60924 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02425 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e026765_P001 Zm00001e026765 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 1505 1588
No external refs found!