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  5. Spa_g30430

Spa_g30430 (OVA5, ATKRS-2)


Aliases : OVA5, ATKRS-2

Description : lysine-tRNA ligase & original description: none


Gene families : OG0005865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30430
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00093330 OVA5, ATKRS-2,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder output from all 47 species
Cba_g23209 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G049100.1 OVA5, ATKRS-2,... lysine-tRNA ligase & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.2 OVA5, ATKRS-2 Lysine--tRNA ligase, chloroplastic/mitochondrial... 0.01 OrthoFinder output from all 47 species
GSVIVT01025473001 OVA5, ATKRS-2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder output from all 47 species
Gb_05325 OVA5, ATKRS-2 lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g41470.3 OVA5, ATKRS-2,... lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species
Len_g27813 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18377 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g09810.1 OVA5, ATKRS-2 lysine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Nbi_g08031 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15615 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03084 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014863 OVA5, ATKRS-2 lysine-tRNA ligase & original description: CDS=179-2008 0.03 OrthoFinder output from all 47 species
Sam_g15740 No alias lysine-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006285_P003 OVA5, ATKRS-2,... lysine-tRNA ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR004364 Aa-tRNA-synt_II 241 609
IPR004365 NA-bd_OB_tRNA 145 223
No external refs found!