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  5. Spa_g30391

Spa_g30391


Description : component *(SWIB) of SWI-B chromatin-remodeling complexes & original description: none


Gene families : OG0001482 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30391
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272500 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT4G34290 No alias SWIB/MDM2 domain superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g017892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12934 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.03 OrthoFinder output from all 47 species
Aob_g00763 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007891 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.05 OrthoFinder output from all 47 species
Dde_g00133 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g04288 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01037881001 No alias No description available 0.06 OrthoFinder output from all 47 species
LOC_Os12g32280.1 LOC_Os12g32280 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10270322g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g21936 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.09 OrthoFinder output from all 47 species
Nbi_g01587 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 117 189
No external refs found!