Spa_g28935


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g28935

Target Alias Description ECC score Gene Family Method Actions
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035608 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087163 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098075 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43139 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g11424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03235 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07446 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07500 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18790 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19114 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19283 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g23735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26657 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g28097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33154 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06025 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14740 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22148 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26985 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27561 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27830 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08782 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0008.g011663 No alias not classified & original description: CDS=1-3036 0.03 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.01 OrthoFinder output from all 47 species
Azfi_s0312.g064188 No alias not classified & original description: CDS=1-2817 0.03 OrthoFinder output from all 47 species
Azfi_s0336.g065543 CRR22 not classified & original description: CDS=1-1749 0.02 OrthoFinder output from all 47 species
Azfi_s0400.g068228 No alias not classified & original description: CDS=1-1902 0.03 OrthoFinder output from all 47 species
Cba_g06497 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13545 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29935 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G059000.1 Ceric.04G059000 not classified & original description: pacid=50632212... 0.03 OrthoFinder output from all 47 species
Ceric.13G057700.1 Ceric.13G057700 not classified & original description: pacid=50635307... 0.02 OrthoFinder output from all 47 species
Ceric.17G054900.1 DOT4, Ceric.17G054900 not classified & original description: pacid=50617812... 0.03 OrthoFinder output from all 47 species
Ceric.18G033700.1 OTP86, Ceric.18G033700 not classified & original description: pacid=50622086... 0.02 OrthoFinder output from all 47 species
Ceric.25G047500.1 Ceric.25G047500 not classified & original description: pacid=50594463... 0.01 OrthoFinder output from all 47 species
Ceric.26G043600.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g02877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27114 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g39652 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26019 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31029 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16902 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_16062 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Gb_23018 REME1 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
Len_g18307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23506 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07842 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11093 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12543 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_40517g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.01 OrthoFinder output from all 47 species
Msp_g03543 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g23950 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41131 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17481 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g03089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03328 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06978 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12984 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47021 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g48319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58725 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03894 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17174 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30421 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55202 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56908 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g59302 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002140 No alias ssDNA-binding protein *(OSB) & original description: CDS=75-2237 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003168 CRR22 not classified & original description: CDS=1-2031 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011528 EMB2758 non-specific cation channel *(PQL1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012420 No alias not classified & original description: CDS=519-2384 0.02 OrthoFinder output from all 47 species
Sam_g07814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35469 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo91775 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.01 OrthoFinder output from all 47 species
Smo92456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc01g100340.4.1 Solyc01g100340 Pentatricopeptide repeat-containing protein At1g09190... 0.03 OrthoFinder output from all 47 species
Solyc04g079410.3.1 Solyc04g079410 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20273 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04160 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16966 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23239 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g23279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24933 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44315 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0017182 peptidyl-diphthamide metabolic process IEP HCCA
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018202 peptidyl-histidine modification IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1900247 regulation of cytoplasmic translational elongation IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 296 320
IPR002885 Pentatricopeptide_repeat 498 522
IPR002885 Pentatricopeptide_repeat 324 349
IPR002885 Pentatricopeptide_repeat 223 267
IPR002885 Pentatricopeptide_repeat 423 470
No external refs found!