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  5. Spa_g26608

Spa_g26608


Description : not classified & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26608
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00144160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
AT1G32360 No alias Zinc finger (CCCH-type) family protein 0.04 OrthoFinder output from all 47 species
Adi_g018593 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aop_g14447 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Cba_g29959 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Dcu_g04722 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Dcu_g17295 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Ehy_g01396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024340001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_34650 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Len_g00493 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Lfl_g22114 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
MA_17477g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g09379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29816 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005344 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Sam_g09323 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Solyc06g072720.3.1 Solyc06g072720 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 216 240
IPR000571 Znf_CCCH 154 178
No external refs found!