Spa_g26018

Description : not classified & original description: none

Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g26018

Target	Alias	Description	ECC score	Gene Family Method
Aop_g08880	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ceric.06G020800.1	Ceric.06G020800	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
LOC_Os07g43740.1	LOC_Os07g43740	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os10g34590.1	LOC_Os10g34590	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum...	0.03	OrthoFinder output from all 47 species
LOC_Os12g02620.1	LOC_Os12g02620	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum...	0.02	OrthoFinder output from all 47 species
Pnu_g06797	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146	No alias	not classified & original description: CDS=1-969	0.03	OrthoFinder output from all 47 species
Solyc02g089410.3.1	Solyc02g089410	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum...	0.02	OrthoFinder output from all 47 species
Solyc05g007895.1.1	Solyc05g007895	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc09g074460.3.1	CIP8, Solyc09g074460	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Zm00001e011788_P002	Zm00001e011788	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	Interproscan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR039525	RNF126-like_zinc-ribbon	14	46

External Links

No external refs found!