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  5. Spa_g25852

Spa_g25852


Description : subunit alpha of coat protein complex & original description: none


Gene families : OG0001943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g25852

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00220200 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
AMTR_s00186p00045360 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
AT1G62020 No alias Coatomer, alpha subunit 0.08 OrthoFinder output from all 47 species
AT2G21390 No alias Coatomer, alpha subunit 0.08 OrthoFinder output from all 47 species
Aev_g07325 No alias subunit alpha of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Ala_g08580 No alias subunit alpha of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Ala_g18597 No alias subunit alpha of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Als_g16600 No alias subunit alpha of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0157.g053779 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Cba_g22303 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.26G051100.1 Ceric.26G051100 subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G062500.1 Ceric.37G062500 subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.151 No alias Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.152 No alias Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cre13.g565850 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Dcu_g12109 No alias subunit alpha of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01009813001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Gb_09624 No alias subunit alpha of coat protein complex 0.05 OrthoFinder output from all 47 species
LOC_Os03g50340.1 LOC_Os03g50340 subunit alpha of coat protein complex 0.07 OrthoFinder output from all 47 species
LOC_Os03g50350.1 LOC_Os03g50350 subunit alpha of coat protein complex 0.08 OrthoFinder output from all 47 species
LOC_Os09g04110.1 LOC_Os09g04110 subunit alpha of coat protein complex 0.05 OrthoFinder output from all 47 species
Len_g20642 No alias subunit alpha of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Lfl_g09317 No alias subunit alpha of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
MA_10428405g0010 No alias subunit alpha of coat protein complex 0.03 OrthoFinder output from all 47 species
MA_10429054g0020 No alias subunit alpha of coat protein complex 0.02 OrthoFinder output from all 47 species
MA_10429054g0030 No alias Coatomer subunit alpha-1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp3g00050.1 No alias subunit alpha of coat protein complex 0.05 OrthoFinder output from all 47 species
Msp_g03578 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Nbi_g06320 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Nbi_g07935 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g15161 No alias subunit alpha of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Pir_g12239 No alias subunit alpha of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Ppi_g17747 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Sam_g07198 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Solyc04g080980.2.1 Solyc04g080980 subunit alpha of coat protein complex 0.07 OrthoFinder output from all 47 species
Solyc07g032100.3.1 Solyc07g032100 subunit alpha of coat protein complex 0.07 OrthoFinder output from all 47 species
Zm00001e005441_P001 Zm00001e005441 subunit alpha of coat protein complex 0.07 OrthoFinder output from all 47 species
Zm00001e012192_P001 Zm00001e012192 subunit alpha of coat protein complex 0.07 OrthoFinder output from all 47 species
Zm00001e016505_P002 Zm00001e016505 subunit alpha of coat protein complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010714 Coatomer_asu_C 814 1215
IPR006692 Coatomer_WD-assoc_reg 340 769
IPR001680 WD40_repeat 241 276
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 198 231
No external refs found!