Spa_g24354

Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g24354
Cluster	HCCA: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT2G31610	No alias	Ribosomal protein S3 family protein	0.03	OrthoFinder output from all 47 species
AT5G35530	No alias	Ribosomal protein S3 family protein	0.03	OrthoFinder output from all 47 species
Als_g11830	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g07331	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g08554	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g21379	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Gb_26539	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os03g38000.1	LOC_Os03g38000	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os07g41750.1	LOC_Os07g41750	component RPS3 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_10436283g0010	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_120861g0010	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
Pir_g02460	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c5_5330V3.1	Pp3c5_5330	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c7_2620V3.1	Pp3c7_2620	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c9_12170V3.1	Pp3c9_12170	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Sam_g27040	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g27041	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Smo270414	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc08g061843.1.1	Solyc08g061843	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Tin_g04971	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g05397	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	21	94
IPR001351	Ribosomal_S3_C	107	189

External Links

No external refs found!

Spa_g24354

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation