1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g23108

Spa_g23108 (AGO9)


Aliases : AGO9

Description : siRNA-integrating factor *(AGO) & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g23108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 AGO4, OCP11,... Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
AMTR_s00024p00238500 AGO1,... Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
AMTR_s00058p00069070 AGO7, ZIP,... Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
AT2G27040 AGO4, OCP11 Argonaute family protein 0.03 OrthoFinder output from all 47 species
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 OrthoFinder output from all 47 species
Adi_g024819 AGO9 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g33064 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Als_g06375 AGO9 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58865 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Dac_g02891 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g09447 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01031430001 AGO5 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
LOC_Os04g52550.1 AGO2, LOC_Os04g52550 Protein argonaute 3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os06g39640.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Len_g08893 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
MA_10427420g0010 AGO1 Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_10429131g0010 AGO1 Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_123150g0010 AGO7, ZIP siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.01 OrthoFinder output from all 47 species
MA_594g0010 PNH, AGO10, ZLL Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_91896g0010 AGO1 Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Mp1g18110.1 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Msp_g03218 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Msp_g13472 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Nbi_g40097 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g11818 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16802 AGO5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15671 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 OrthoFinder output from all 47 species
Pir_g66376 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Pp3c17_350V3.1 AGO1, Pp3c17_350 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.01 OrthoFinder output from all 47 species
Ppi_g02415 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Ppi_g29047 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Smo98227 AGO1 Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Solyc01g010970.3.1 AGO7, ZIP, Solyc01g010970 Protein argonaute 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g57163 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Tin_g39101 AGO1 regulatory protein *(AGO7) of transacTing siRNA pathway... 0.03 OrthoFinder output from all 47 species
Zm00001e017367_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Zm00001e027670_P001 AGO1, Zm00001e027670 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Zm00001e037347_P002 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR003165 Piwi 637 949
IPR032474 Argonaute_N 130 288
IPR003100 PAZ_dom 354 480
IPR014811 ArgoL1 300 348
IPR032472 ArgoL2 490 536
IPR032473 Argonaute_Mid_dom 543 603
No external refs found!