1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g22416

Spa_g22416 (LSH4)


Aliases : LSH4

Description : plant-specific ALOG-type transcription factor & original description: none


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g22416
Cluster HCCA: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 LSH6,... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.06 OrthoFinder output from all 47 species
AMTR_s00155p00022580 LSH6,... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
AT2G31160 LSH3 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT3G23290 LSH4 No description available 0.02 OrthoFinder output from all 47 species
Ala_g01257 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ala_g06922 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g04816 LSH4 plant-specific ALOG-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Als_g08697 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g08698 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g17249 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g21143 LSH6 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene25077.t1 LSH4, Aspi01Gene25077 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene29667.t1 LSH4, Aspi01Gene29667 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32958.t1 LSH4, Aspi01Gene32958 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene66763.t1 LSH4, Aspi01Gene66763 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0639.g080525 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g31587 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G086500.1 LSH4, Ceric.02G086500 plant-specific ALOG-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.14G090800.1 LSH6, Ceric.14G090800 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.18G075200.1 LSH4, Ceric.18G075200 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.22G071900.1 LSH6, Ceric.22G071900 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g03257 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g15328 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g44523 LSH4 plant-specific ALOG-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dde_g22007 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01014203001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7... 0.04 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 OrthoFinder output from all 47 species
GSVIVT01024677001 LSH6 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.04 OrthoFinder output from all 47 species
Len_g03152 LSH6 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Len_g04629 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_12926g0010 LSH4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 OrthoFinder output from all 47 species
Msp_g25188 LSH6 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g02008 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Pir_g10175 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g20213 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g32132 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000386 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023275 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023794 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc02g069510.1.1 LSH4, Solyc02g069510 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.01 OrthoFinder output from all 47 species
Solyc07g062470.4.1 LSH10, Solyc07g062470 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 OrthoFinder output from all 47 species
Solyc10g008000.1.1 LSH10, Solyc10g008000 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 OrthoFinder output from all 47 species
Zm00001e004570_P001 LSH4, Zm00001e004570 Protein G1-like4 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Zm00001e012687_P001 LSH4, Zm00001e012687 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Zm00001e019403_P001 LSH6, Zm00001e019403 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e027222_P001 LSH6, Zm00001e027222 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 OrthoFinder output from all 47 species
Zm00001e032784_P001 LSH6, Zm00001e032784 Protein G1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 171 263
No external refs found!