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Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: none
Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g22203 | |
| Cluster | HCCA: Cluster_84 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00202p00038800 | evm_27.TU.AmTr_v1... | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G21580 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g086844 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g33279 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g26394 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g07788 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.23G086900.1 | Ceric.23G086900 | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g09581 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008802001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_37874 | No alias | RNA degradation surveillance factor (SOP1) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g43120.1 | LOC_Os06g43120 | RNA degradation surveillance factor (SOP1) | 0.06 | OrthoFinder output from all 47 species | |
| Len_g41224 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g16590 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| MA_140138g0020 | No alias | RNA degradation surveillance factor (SOP1) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g23885 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g39230 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g15166 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| Ppi_g15340 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g057990.4.1 | Solyc04g057990 | RNA degradation surveillance factor (SOP1) | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e037509_P004 | Zm00001e037509 | RNA degradation surveillance factor (SOP1) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |